HL_9YQ0_026
3D structure
- PDB id
- 9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 2, Structure Ib
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YQ0_026 not in the Motif Atlas
- Homologous match to HL_8GLP_022
- Geometric discrepancy: 0.0771
- The information below is about HL_8GLP_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.6
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 434
Unit IDs
9YQ0|1|5|G|1561
9YQ0|1|5|G|1562
9YQ0|1|5|A|1563
9YQ0|1|5|A|1564
9YQ0|1|5|A|1565
9YQ0|1|5|C|1566
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain LL
- Ribosomal protein S11
- Chain NN
- Ribosomal protein S13
- Chain p
- eL43
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