HL_9YQ0_028

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9YQ0|1|5|A|1630, 9YQ0|1|5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YQ0_028 not in the Motif Atlas

Homologous match to HL_8GLP_024

Geometric discrepancy: 0.0413

The information below is about HL_8GLP_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9YQ0|1|5|G|1627
9YQ0|1|5|C|1628
9YQ0|1|5|G|1629
9YQ0|1|5|A|1630
9YQ0|1|5|A|1631
9YQ0|1|5|A|1632
9YQ0|1|5|G|1633
9YQ0|1|5|A|1634
9YQ0|1|5|C|1635

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37