HL_9YQ0_059
3D structure
- PDB id
- 9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 2, Structure Ib
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 9YQ0|1|5|A|3876, 9YQ0|1|5|A|3877, 9YQ0|1|5|C|3878
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YQ0_059 not in the Motif Atlas
- Homologous match to HL_8GLP_055
- Geometric discrepancy: 0.0519
- The information below is about HL_8GLP_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9YQ0|1|5|G|3873
9YQ0|1|5|G|3874
9YQ0|1|5|G|3875
9YQ0|1|5|A|3876
9YQ0|1|5|A|3877
9YQ0|1|5|C|3878
9YQ0|1|5|G|3879
9YQ0|1|5|G|3880
9YQ0|1|5|G|3881
9YQ0|1|5|C|3882
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain e
- Ribosomal protein L32
Coloring options: