HL_9YQ0_093
3D structure
- PDB id
- 9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 2, Structure Ib
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGACCCG
- Length
- 7 nucleotides
- Bulged bases
- 9YQ0|1|9|A|500, 9YQ0|1|9|C|502, 9YQ0|1|9|C|503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YQ0_093 not in the Motif Atlas
- Homologous match to HL_9PN5_088
- Geometric discrepancy: 0.1968
- The information below is about HL_9PN5_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25795.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9YQ0|1|9|C|498
9YQ0|1|9|G|499
9YQ0|1|9|A|500
9YQ0|1|9|C|501
9YQ0|1|9|C|502
9YQ0|1|9|C|503
9YQ0|1|9|G|504
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain EE
- eS4 (S4 X isoform)
- Chain YY
- 40S ribosomal protein S24
Coloring options: