3D structure

PDB id
9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Vacant ribosome with P-site tRNA, substate 2, Structure Ib
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UCCACUUUAAAUCCUUUAA
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9YQ0|1|9|U|566
9YQ0|1|9|C|567
9YQ0|1|9|C|568
9YQ0|1|9|A|569
9YQ0|1|9|C|570
9YQ0|1|9|U|571
9YQ0|1|9|U|572
9YQ0|1|9|U|573
9YQ0|1|9|A|574
9YQ0|1|9|A|575
9YQ0|1|9|A|576
9YQ0|1|9|U|577
9YQ0|1|9|C|578
9YQ0|1|9|C|579
9YQ0|1|9|U|580
9YQ0|1|9|U|581
9YQ0|1|9|U|582
9YQ0|1|9|A|583
9YQ0|1|9|A|584

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain EE
eS4 (S4 X isoform)
Chain JJ
Ribosomal protein S9 (Predicted)
Chain YY
40S ribosomal protein S24

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1165 s