HL_9YQ0_106

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9YQ0|1|9|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YQ0_106 not in the Motif Atlas

Homologous match to HL_9H3G_100

Geometric discrepancy: 0.2083

The information below is about HL_9H3G_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9YQ0|1|9|A|1295
9YQ0|1|9|U|1296
9YQ0|1|9|U|1297
9YQ0|1|9|G|1298
9YQ0|1|9|A|1299
9YQ0|1|9|U|1300
9YQ0|1|9|A|1301
9YQ0|1|9|G|1302
9YQ0|1|9|C|1303
9YQ0|1|9|U|1304

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain dd

eS29

Chain ff

Ribosomal protein S27a