HL_9YQ1_004
3D structure
- PDB id
- 9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 3, Structure Ic
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGCGGAAG
- Length
- 9 nucleotides
- Bulged bases
- 9YQ1|1|13|C|17, 9YQ1|1|13|G|18, 9YQ1|1|13|G|19, 9YQ1|1|13|A|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YQ1_004 not in the Motif Atlas
- Homologous match to HL_3KFU_004
- Geometric discrepancy: 0.1355
- The information below is about HL_3KFU_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YQ1|1|13|C|14
9YQ1|1|13|A|15
9YQ1|1|13|G|16
9YQ1|1|13|C|17
9YQ1|1|13|G|18
9YQ1|1|13|G|19
9YQ1|1|13|A|20
9YQ1|1|13|A|21
9YQ1|1|13|G|22
Current chains
- Chain 13
- Met-tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- Ribosomal protein L11
- Chain o
- Large ribosomal subunit protein eL42
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