HL_9YQ1_006
3D structure
- PDB id
- 9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 3, Structure Ic
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YQ1_006 not in the Motif Atlas
- Homologous match to HL_3EPH_003
- Geometric discrepancy: 0.2242
- The information below is about HL_3EPH_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9YQ1|1|13|G|53
9YQ1|1|13|A|54
9YQ1|1|13|U|55
9YQ1|1|13|C|56
9YQ1|1|13|G|57
9YQ1|1|13|A|58
9YQ1|1|13|A|59
9YQ1|1|13|A|60
9YQ1|1|13|C|61
Current chains
- Chain 13
- Met-tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- Ribosomal protein L11
- Chain o
- Large ribosomal subunit protein eL42
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