HL_9YQ1_014

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

9YQ1|1|5|G|294, 9YQ1|1|5|A|295, 9YQ1|1|5|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|5|C|289
9YQ1|1|5|U|290
9YQ1|1|5|U|291
9YQ1|1|5|G|292
9YQ1|1|5|G|293
9YQ1|1|5|G|294
9YQ1|1|5|A|295
9YQ1|1|5|A|296
9YQ1|1|5|U|297
9YQ1|1|5|G|298

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain a

60S ribosomal protein L27a

Chain o

Large ribosomal subunit protein eL42