HL_9YQ1_040

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YQ1_040 not in the Motif Atlas

Homologous match to HL_8GLP_035

Geometric discrepancy: 0.0401

The information below is about HL_8GLP_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9YQ1|1|5|C|2458
9YQ1|1|5|G|2459
9YQ1|1|5|A|2460
9YQ1|1|5|G|2461
9YQ1|1|5|C|2462
9YQ1|1|5|G|2463

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37