HL_9YQ1_049

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

9YQ1|1|5|C|2794, 9YQ1|1|5|G|2796, 9YQ1|1|5|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YQ1_049 not in the Motif Atlas

Homologous match to HL_8GLP_045

Geometric discrepancy: 0.0401

The information below is about HL_8GLP_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9YQ1|1|5|C|2792
9YQ1|1|5|G|2793
9YQ1|1|5|C|2794
9YQ1|1|5|A|2795
9YQ1|1|5|G|2796
9YQ1|1|5|C|2797
9YQ1|1|5|A|2798
9YQ1|1|5|G|2799

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain P

Large ribosomal subunit protein uL22

Chain j

Ribosomal protein L37

Chain l

eL39