HL_9YQ1_050

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

9YQ1|1|5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YQ1_050 not in the Motif Atlas

Homologous match to HL_9H3G_046

Geometric discrepancy: 0.1274

The information below is about HL_9H3G_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9YQ1|1|5|U|2810
9YQ1|1|5|G|2811
9YQ1|1|5|A|2812
9YQ1|1|5|A|2813
9YQ1|1|5|C|2814
9YQ1|1|5|A|2815
9YQ1|1|5|G|2816

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein L19