HL_9YQ1_083
3D structure
- PDB id
- 9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 3, Structure Ic
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUCCUC
- Length
- 7 nucleotides
- Bulged bases
- 9YQ1|1|8|U|124, 9YQ1|1|8|C|125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YQ1_083 not in the Motif Atlas
- Geometric match to HL_8G9Z_003
- Geometric discrepancy: 0.2712
- The information below is about HL_8G9Z_003
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_37569.4
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9YQ1|1|8|G|122
9YQ1|1|8|U|123
9YQ1|1|8|U|124
9YQ1|1|8|C|125
9YQ1|1|8|C|126
9YQ1|1|8|U|127
9YQ1|1|8|C|128
Current chains
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: