HL_9YQ1_094

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YQ1_094 not in the Motif Atlas

Geometric match to HL_6LAX_002

Geometric discrepancy: 0.3885

The information below is about HL_6LAX_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9YQ1|1|9|C|539
9YQ1|1|9|U|540
9YQ1|1|9|U|541
9YQ1|1|9|U|542
9YQ1|1|9|C|543
9YQ1|1|9|G|544

Current chains

Chain 9

18S ribosomal RNA

Nearby chains