HL_9YQ1_105

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

9YQ1|1|9|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|9|G|1245
9YQ1|1|9|A|1246
9YQ1|1|9|C|1247
9YQ1|1|9|U|1248
9YQ1|1|9|C|1249
9YQ1|1|9|A|1250
9YQ1|1|9|A|1251
9YQ1|1|9|C|1252
9YQ1|1|9|A|1253
9YQ1|1|9|C|1254

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 13

Transfer RNA; tRNA

Chain PP

uS19

Chain QQ

uS9

Chain UU

uS10

Chain dd

eS29