HL_9ZFD_008

3D structure

PDB id

9ZFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GGAAAUGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ZFD_008 not in the Motif Atlas

Geometric match to HL_2A64_005

Geometric discrepancy: 0.2836

The information below is about HL_2A64_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48408.1

Basepair signature

cWW-tSH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9ZFD|1|A|G|288
9ZFD|1|A|G|289
9ZFD|1|A|A|290
9ZFD|1|A|A|291
9ZFD|1|A|A|292
9ZFD|1|A|U|293
9ZFD|1|A|G|294
9ZFD|1|A|A|295
9ZFD|1|A|A|296
9ZFD|1|A|C|297

Current chains

Chain A

RNase P RNA

Nearby chains