HL_9ZIX_003

3D structure

PDB id

9ZIX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 20

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CGAAUCCAUAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ZIX_003 not in the Motif Atlas

Homologous match to HL_1NBS_004

Geometric discrepancy: 0.5103

The information below is about HL_1NBS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48408.1

Basepair signature

cWW-tSH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9ZIX|1|A|C|97
9ZIX|1|A|G|98
9ZIX|1|A|A|99
9ZIX|1|A|A|100
9ZIX|1|A|U|101
9ZIX|1|A|C|102
9ZIX|1|A|C|103
9ZIX|1|A|A|104
9ZIX|1|A|U|105
9ZIX|1|A|A|106
9ZIX|1|A|A|107
9ZIX|1|A|G|108

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains