IL_10FZ_057

3D structure

PDB id

10FZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit from E. coli missing the gene encoding for the 16S rRNA 2'-O-methyltransferase RsmI

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10FZ_057 not in the Motif Atlas

Geometric match to IL_9H3G_004

Geometric discrepancy: 0.2651

The information below is about IL_9H3G_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

10FZ|1|A|C|1259
10FZ|1|A|G|1260
10FZ|1|A|A|1261
10FZ|1|A|C|1262
10FZ|1|A|C|1263
*
10FZ|1|A|G|1272
10FZ|1|A|C|1273
10FZ|1|A|A|1274
10FZ|1|A|A|1275
10FZ|1|A|G|1276

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14