IL_10FZ_060

3D structure

PDB id

10FZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit from E. coli missing the gene encoding for the 16S rRNA 2'-O-methyltransferase RsmI

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10FZ_060 not in the Motif Atlas

Geometric match to IL_8CRE_467

Geometric discrepancy: 0.2628

The information below is about IL_8CRE_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

10FZ|1|A|G|1401
10FZ|1|A|C|1402
10FZ|1|A|C|1403
10FZ|1|A|C|1404
*
10FZ|1|A|G|1497
10FZ|1|A|U|1498
10FZ|1|A|A|1499
10FZ|1|A|A|1500
10FZ|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains