IL_10PX_052

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

10PX|1|1A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10PX_052 not in the Motif Atlas

Homologous match to IL_7A0S_051

Geometric discrepancy: 0.4853

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

10PX|1|1A|C|1417
10PX|1|1A|G|1418
10PX|1|1A|A|1419
10PX|1|1A|U|1420
10PX|1|1A|G|1421
*
10PX|1|1A|C|1577
10PX|1|1A|U|1578
10PX|1|1A|A|1579
10PX|1|1A|A|1580
10PX|1|1A|G|1581

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains