IL_10PX_075
3D structure
- PDB id
- 10PX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 10PX|1|1A|A|1938, 10PX|1|1A|U|1944, 10PX|1|1A|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_10PX_075 not in the Motif Atlas
- Homologous match to IL_7A0S_072
- Geometric discrepancy: 0.2804
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
10PX|1|1A|C|1934
10PX|1|1A|G|1935
10PX|1|1A|A|1936
10PX|1|1A|A|1937
10PX|1|1A|A|1938
10PX|1|1A|5MU|1939
10PX|1|1A|U|1940
10PX|1|1A|C|1941
10PX|1|1A|5MC|1942
10PX|1|1A|U|1943
10PX|1|1A|U|1944
10PX|1|1A|G|1945
*
10PX|1|1A|C|1961
10PX|1|1A|5MC|1962
10PX|1|1A|U|1963
10PX|1|1A|G|1964
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1w
- Transfer RNA; tRNA
Coloring options: