IL_10PX_213

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

10PX|1|2A|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10PX_213 not in the Motif Atlas

Geometric match to IL_9DFE_045

Geometric discrepancy: 0.1868

The information below is about IL_9DFE_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.5

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

10PX|1|2A|C|1202
10PX|1|2A|G|1203
10PX|1|2A|A|1204
10PX|1|2A|U|1205
10PX|1|2A|G|1206
*
10PX|1|2A|U|1240
10PX|1|2A|A|1241
10PX|1|2A|A|1242
10PX|1|2A|G|1243

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15