IL_10PX_254

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGAGCC*GGCGCCGGUGAAAUAC

Length

22 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

10PX|1|2A|G|2124
10PX|1|2A|G|2125
10PX|1|2A|A|2126
10PX|1|2A|G|2127
10PX|1|2A|C|2128
10PX|1|2A|C|2129
*
10PX|1|2A|G|2159
10PX|1|2A|G|2160
10PX|1|2A|C|2161
10PX|1|2A|G|2162
10PX|1|2A|C|2163
10PX|1|2A|C|2164
10PX|1|2A|G|2165
10PX|1|2A|G|2166
10PX|1|2A|U|2167
10PX|1|2A|G|2168
10PX|1|2A|A|2169
10PX|1|2A|A|2170
10PX|1|2A|A|2171
10PX|1|2A|U|2172
10PX|1|2A|A|2173
10PX|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA