IL_10PX_334

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

10PX|1|2a|5MC|1400, 10PX|1|2a|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10PX_334 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.2075

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

10PX|1|2a|C|1399
10PX|1|2a|5MC|1400
10PX|1|2a|G|1401
*
10PX|1|2a|C|1501
10PX|1|2a|A|1502
10PX|1|2a|A|1503
10PX|1|2a|G|1504

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2v

MET-PHE-mRNA

Chain 2x

Transfer RNA; tRNA