IL_10QM_007

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_007 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0396

The information below is about IL_8B0X_071

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

10QM|1|I|C|239
10QM|1|I|C|240
10QM|1|I|A|241
10QM|1|I|G|242
10QM|1|I|U|243
10QM|1|I|A|244
10QM|1|I|G|245
*
10QM|1|I|C|253
10QM|1|I|G|254
10QM|1|I|A|255
10QM|1|I|A|256
10QM|1|I|C|257
10QM|1|I|G|258

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL15

Chain l

Large ribosomal subunit protein bL35