IL_10QM_009

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_009 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.3113

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

10QM|1|I|C|274
10QM|1|I|C|275
10QM|1|I|U|276
10QM|1|I|G|277
10QM|1|I|A|278
10QM|1|I|A|279
10QM|1|I|U|280
10QM|1|I|C|281
*
10QM|1|I|G|359
10QM|1|I|U|360
10QM|1|I|G|361
10QM|1|I|A|362
10QM|1|I|G|363

Current chains

Chain I

23S ribosomal RNA

Nearby chains