IL_10QM_012

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_012 not in the Motif Atlas

Geometric match to IL_8B0X_076

Geometric discrepancy: 0.0861

The information below is about IL_8B0X_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

10QM|1|I|G|536
10QM|1|I|G|537
10QM|1|I|A|538
10QM|1|I|G|539
*
10QM|1|I|U|554
10QM|1|I|G|555
10QM|1|I|A|556
10QM|1|I|C|557

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein uL13

Chain Y

50S ribosomal protein L20

Chain Z

Ribosomal protein L21