IL_10QM_014

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_014 not in the Motif Atlas

Homologous match to IL_7A0S_013

Geometric discrepancy: 0.1819

The information below is about IL_7A0S_013

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

10QM|1|I|U|606
10QM|1|I|U|607
10QM|1|I|A|608
10QM|1|I|A|609
10QM|1|I|C|610
*
10QM|1|I|G|618
10QM|1|I|G|619
10QM|1|I|G|620
10QM|1|I|A|621
10QM|1|I|G|622

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL4

Chain T

Large ribosomal subunit protein uL15