IL_10QM_041

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

10QM|1|I|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_041 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.1494

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_84227.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

10QM|1|I|C|1196
10QM|1|I|G|1197
10QM|1|I|U|1198
*
10QM|1|I|A|1247
10QM|1|I|G|1248
10QM|1|I|U|1249
10QM|1|I|G|1250

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL4

Chain T

Large ribosomal subunit protein uL15

Chain Y

50S ribosomal protein L20