IL_10QM_090

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

10QM|1|I|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_090 not in the Motif Atlas

Geometric match to IL_9H3G_006

Geometric discrepancy: 0.3431

The information below is about IL_9H3G_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

10QM|1|I|U|2401
10QM|1|I|U|2402
10QM|1|I|C|2403
*
10QM|1|I|G|2414
10QM|1|I|G|2415

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL15

Chain j

Large ribosomal subunit protein bL33

Chain l

Large ribosomal subunit protein bL35