IL_10QM_099

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

10QM|1|I|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_099 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.094

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

10QM|1|I|U|2522
10QM|1|I|G|2523
*
10QM|1|I|C|2540
10QM|1|I|A|2541
10QM|1|I|A|2542
10QM|1|I|G|2543

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein uL13

Chain m

50S ribosomal protein L36