IL_10QM_108

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_108 not in the Motif Atlas

Homologous match to IL_7A0S_099

Geometric discrepancy: 0.1779

The information below is about IL_7A0S_099

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

10QM|1|I|G|2838
10QM|1|I|G|2839
*
10QM|1|I|U|2878
10QM|1|I|A|2879
10QM|1|I|C|2880

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein bL17

Chain X

Large ribosomal subunit protein bL19