IL_10ZY_003

3D structure

PDB id

10ZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast co-transcriptional pre-60S assembly intermediate Pwp1 RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

10ZY|1|1|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10ZY_003 not in the Motif Atlas

Homologous match to IL_9AXU_006

Geometric discrepancy: 0.0927

The information below is about IL_9AXU_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.4

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

9

Unit IDs

10ZY|1|1|A|123
10ZY|1|1|U|124
*
10ZY|1|1|A|144
10ZY|1|1|G|145
10ZY|1|1|U|146
10ZY|1|1|U|147
10ZY|1|1|G|148
10ZY|1|1|U|149

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain N

60S ribosomal protein L15-A

Chain R

Periodic tryptophan protein 1