IL_11AA_006
3D structure
- PDB id
- 11AA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast co-transcriptional pre-60S assembly intermediate Nop12 RNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- AUUUGAAAU*AGUUGUAAU
- Length
- 18 nucleotides
- Bulged bases
- 11AA|1|1|U|117, 11AA|1|1|G|120, 11AA|1|1|A|121, 11AA|1|1|U|147
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11AA|1|1|A|116
11AA|1|1|U|117
11AA|1|1|U|118
11AA|1|1|U|119
11AA|1|1|G|120
11AA|1|1|A|121
11AA|1|1|A|122
11AA|1|1|A|123
11AA|1|1|U|124
*
11AA|1|1|A|144
11AA|1|1|G|145
11AA|1|1|U|146
11AA|1|1|U|147
11AA|1|1|G|148
11AA|1|1|U|149
11AA|1|1|A|150
11AA|1|1|A|151
11AA|1|1|U|152
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 7
- Nucleolar protein 16
- Chain G
- 60S ribosomal protein L8-A
- Chain N
- 60S ribosomal protein L15-A
- Chain i
- 60S ribosomal protein L36-A
- Chain n
- Pescadillo homolog
- Chain p
- ATP-dependent RNA helicase HAS1
- Chain s
- Ribosome biogenesis protein ERB1
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