IL_11AA_010
3D structure
- PDB id
- 11AA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast co-transcriptional pre-60S assembly intermediate Nop12 RNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- UG*UGAA
- Length
- 6 nucleotides
- Bulged bases
- 11AA|1|3|G|52, 11AA|1|3|A|53
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11AA_010 not in the Motif Atlas
- Geometric match to IL_9H3G_163
- Geometric discrepancy: 0.2036
- The information below is about IL_9H3G_163
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71421.5
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
11AA|1|3|U|26
11AA|1|3|G|27
*
11AA|1|3|U|51
11AA|1|3|G|52
11AA|1|3|A|53
11AA|1|3|A|54
Current chains
- Chain 3
- Internal transcribed spacer 2 ITS2
Nearby chains
- Chain G
- 60S ribosomal protein L8-A
- Chain K
- Proteasome-interacting protein CIC1
- Chain o
- Ribosome biogenesis protein 15
- Chain p
- ATP-dependent RNA helicase HAS1
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