IL_11BQ_064

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

11BQ|1|A|A|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11BQ_064 not in the Motif Atlas

Geometric match to IL_4V9F_032

Geometric discrepancy: 0.2892

The information below is about IL_4V9F_032

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

11BQ|1|A|U|1440
11BQ|1|A|A|1441
11BQ|1|A|G|1442
*
11BQ|1|A|C|1460
11BQ|1|A|G|1461

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain o

Large ribosomal subunit protein bL19