IL_11BQ_115

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

11BQ|1|a|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11BQ_115 not in the Motif Atlas

Homologous match to IL_7A0S_051

Geometric discrepancy: 0.5036

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

11BQ|1|a|C|1417
11BQ|1|a|G|1418
11BQ|1|a|A|1419
11BQ|1|a|A|1420
11BQ|1|a|G|1421
*
11BQ|1|a|C|1577
11BQ|1|a|U|1578
11BQ|1|a|A|1579
11BQ|1|a|A|1580
11BQ|1|a|G|1581

Current chains

Chain a

23S ribosomal RNA

Nearby chains