IL_11BQ_139

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11BQ_139 not in the Motif Atlas

Geometric match to IL_8B0X_136

Geometric discrepancy: 0.0724

The information below is about IL_8B0X_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

11BQ|1|a|U|1864
11BQ|1|a|U|1865
11BQ|1|a|A|1866
11BQ|1|a|G|1867
*
11BQ|1|a|C|1874
11BQ|1|a|G|1875
11BQ|1|a|A|1876
11BQ|1|a|A|1877
11BQ|1|a|G|1878

Current chains

Chain a

23S ribosomal RNA

Nearby chains