IL_11BQ_171

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11BQ_171 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.3698

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

11BQ|1|a|U|2847
11BQ|1|a|G|2848
11BQ|1|a|U|2849
11BQ|1|a|A|2850
11BQ|1|a|A|2851
11BQ|1|a|G|2852
*
11BQ|1|a|U|2865
11BQ|1|a|U|2866
11BQ|1|a|G|2867
11BQ|1|a|A|2868
11BQ|1|a|G|2869

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein bL19