IL_11DG_001

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGA*UAA

Length

7 nucleotides

Bulged bases

11DG|1|A|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_001 not in the Motif Atlas

Geometric match to IL_4KTG_002

Geometric discrepancy: 0.2351

The information below is about IL_4KTG_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

11DG|1|A|U|29
11DG|1|A|U|30
11DG|1|A|G|31
11DG|1|A|A|32
*
11DG|1|A|U|552
11DG|1|A|A|553
11DG|1|A|A|554

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain L

30S ribosomal protein S12