IL_11DG_007

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

11DG|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_007 not in the Motif Atlas

Homologous match to IL_6CZR_121

Geometric discrepancy: 0.4446

The information below is about IL_6CZR_121

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.5

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

11DG|1|A|G|147
11DG|1|A|G|148
11DG|1|A|A|149
11DG|1|A|U|150
11DG|1|A|A|151
11DG|1|A|A|152
11DG|1|A|C|153
*
11DG|1|A|G|168
11DG|1|A|C|169
11DG|1|A|U|170
11DG|1|A|A|171
11DG|1|A|A|172
11DG|1|A|U|173
11DG|1|A|A|174
11DG|1|A|C|175

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20