IL_11DG_016

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGGAAGGUGGU*AUCAUUUGACGUUAC

Length

28 nucleotides

Bulged bases

11DG|1|A|A|448, 11DG|1|A|G|449, 11DG|1|A|G|450, 11DG|1|A|U|455, 11DG|1|A|U|480, 11DG|1|A|C|483, 11DG|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11DG|1|A|G|446
11DG|1|A|G|447
11DG|1|A|A|448
11DG|1|A|G|449
11DG|1|A|G|450
11DG|1|A|A|451
11DG|1|A|A|452
11DG|1|A|G|453
11DG|1|A|G|454
11DG|1|A|U|455
11DG|1|A|G|456
11DG|1|A|G|457
11DG|1|A|U|458
*
11DG|1|A|A|474
11DG|1|A|U|475
11DG|1|A|C|476
11DG|1|A|A|477
11DG|1|A|U|478
11DG|1|A|U|479
11DG|1|A|U|480
11DG|1|A|G|481
11DG|1|A|A|482
11DG|1|A|C|483
11DG|1|A|G|484
11DG|1|A|U|485
11DG|1|A|U|486
11DG|1|A|A|487
11DG|1|A|C|488

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain P

Small ribosomal subunit protein bS16