IL_11DG_017

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAA*UAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_017 not in the Motif Atlas

Geometric match to IL_8QYX_171

Geometric discrepancy: 0.1469

The information below is about IL_8QYX_171

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

11DG|1|A|U|458
11DG|1|A|A|459
11DG|1|A|A|460
*
11DG|1|A|U|472
11DG|1|A|A|473
11DG|1|A|A|474

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16