IL_11DG_022

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAAGUCA*UGAUACUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11DG|1|A|U|594
11DG|1|A|A|595
11DG|1|A|A|596
11DG|1|A|G|597
11DG|1|A|U|598
11DG|1|A|C|599
11DG|1|A|A|600
*
11DG|1|A|U|638
11DG|1|A|G|639
11DG|1|A|A|640
11DG|1|A|U|641
11DG|1|A|A|642
11DG|1|A|C|643
11DG|1|A|U|644
11DG|1|A|G|645

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein uS8

Chain Q

Small ribosomal subunit protein uS17