IL_11DG_025
3D structure
- PDB id
- 11DG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUAGAG*UGGAC
- Length
- 11 nucleotides
- Bulged bases
- 11DG|1|A|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11DG_025 not in the Motif Atlas
- Geometric match to IL_9JA9_001
- Geometric discrepancy: 0.3948
- The information below is about IL_9JA9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
11DG|1|A|G|661
11DG|1|A|U|662
11DG|1|A|A|663
11DG|1|A|G|664
11DG|1|A|A|665
11DG|1|A|G|666
*
11DG|1|A|U|740
11DG|1|A|G|741
11DG|1|A|G|742
11DG|1|A|A|743
11DG|1|A|C|744
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain F
- Small ribosomal subunit protein bS6
- Chain O
- Small ribosomal subunit protein uS15
- Chain R
- Small ribosomal subunit protein bS18
Coloring options: