IL_11DG_033

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

11DG|1|A|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_033 not in the Motif Atlas

Homologous match to IL_6CZR_148

Geometric discrepancy: 0.2035

The information below is about IL_6CZR_148

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

11DG|1|A|G|925
11DG|1|A|G|926
11DG|1|A|G|927
*
11DG|1|A|U|1391
11DG|1|A|U|1392

Current chains

Chain A

16S ribosomal RNA

Nearby chains