IL_11DG_040

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUUGCC*GAACUCC

Length

14 nucleotides

Bulged bases

11DG|1|A|G|1127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11DG|1|A|G|1123
11DG|1|A|U|1124
11DG|1|A|U|1125
11DG|1|A|U|1126
11DG|1|A|G|1127
11DG|1|A|C|1128
11DG|1|A|C|1129
*
11DG|1|A|G|1145
11DG|1|A|A|1146
11DG|1|A|A|1147
11DG|1|A|C|1148
11DG|1|A|U|1149
11DG|1|A|C|1150
11DG|1|A|C|1151

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10