IL_11DG_042
3D structure
- PDB id
- 11DG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UACAGAGGGCAG*CGAAUCUCACAAAG
- Length
- 26 nucleotides
- Bulged bases
- 11DG|1|A|G|1252, 11DG|1|A|A|1258, 11DG|1|A|G|1279, 11DG|1|A|A|1281, 11DG|1|A|U|1282, 11DG|1|A|C|1283, 11DG|1|A|C|1287
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11DG|1|A|U|1248
11DG|1|A|A|1249
11DG|1|A|C|1250
11DG|1|A|A|1251
11DG|1|A|G|1252
11DG|1|A|A|1253
11DG|1|A|G|1254
11DG|1|A|G|1255
11DG|1|A|G|1256
11DG|1|A|C|1257
11DG|1|A|A|1258
11DG|1|A|G|1259
*
11DG|1|A|C|1278
11DG|1|A|G|1279
11DG|1|A|A|1280
11DG|1|A|A|1281
11DG|1|A|U|1282
11DG|1|A|C|1283
11DG|1|A|U|1284
11DG|1|A|C|1285
11DG|1|A|A|1286
11DG|1|A|C|1287
11DG|1|A|A|1288
11DG|1|A|A|1289
11DG|1|A|A|1290
11DG|1|A|G|1291
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14
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