IL_11DG_044

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_044 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.2195

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11DG|1|A|C|1304
11DG|1|A|G|1305
11DG|1|A|G|1306
11DG|1|A|A|1307
11DG|1|A|U|1308
11DG|1|A|U|1309
*
11DG|1|A|A|1330
11DG|1|A|U|1331
11DG|1|A|G|1332
11DG|1|A|A|1333
11DG|1|A|A|1334
11DG|1|A|G|1335

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13