IL_11DG_062

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

11DG|1|a|U|276, 11DG|1|a|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_062 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.3452

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

11DG|1|a|C|274
11DG|1|a|C|275
11DG|1|a|U|276
11DG|1|a|G|277
11DG|1|a|A|278
11DG|1|a|A|279
11DG|1|a|U|280
11DG|1|a|C|281
*
11DG|1|a|G|359
11DG|1|a|U|360
11DG|1|a|G|361
11DG|1|a|A|362
11DG|1|a|G|363

Current chains

Chain a

23S ribosomal RNA

Nearby chains